Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs2697651 chr16:10833734 G/A 2.24E-5 504 23.53 20.37 8.17 KM Plot
LGG rs2699239 chr7:54842549 C/G 6.26E-9 509 24.23 18.8 16.93 KM Plot
LGG rs2719636 chr16:10838509 G/C 1.32E-5 500 23.53 21.28 8.17 KM Plot
LGG rs2754252 chr6:88386010 A/G 9.41E-6 497 22.87 21.27 8.07 KM Plot
LGG rs2770995 chr5:180664105 C/G 1.76E-9 509 6.63 19.68 23.52 KM Plot
LGG rs2770996 chr5:180664256 A/G 1.18E-9 509 6.63 19.2 23.72 KM Plot
LGG rs2832250 chr21:30557718 C/G 0 509 3.2 26.9 21.18 KM Plot
LGG rs28542199 chr16:67936975 T/C 1.49E-11 505 21.6 31.63 6.47 KM Plot
LGG rs28670278 chr14:24420956 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs28674745 chr14:46924415 G/C 4.39E-10 507 21.87 27.73 14.5 KM Plot
LGG rs28693392 chr14:24420642 C/G 1.16E-5 502 23.83 21 11.08 KM Plot
LGG rs28754581 chr15:61480392 T/C 5.53E-5 503 22.87 21.3 6.47 KM Plot
LGG rs28828113 chr14:24413307 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs28836502 chr14:24417944 G/T 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs28856896 chr14:24415733 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot